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Subset and annotate a DESeqDataSet for contrast-specific heatmaps

Source: R/general_misc_utils.R
get_annotation_contrast.Rd

Subset and annotate a DESeqDataSet for contrast-specific heatmaps

Usage

get_annotation_contrast(dds, indicate, contrast = contrast_samples)

Arguments

dds

A DESeqDataSet or SummarizedExperiment.

indicate

Character vector of column names in colData(dds) to use for annotation.

contrast

Character vector of condition patterns to retain in the annotation.

Value

A ComplexHeatmap::HeatmapAnnotation object.