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Create a SummarizedExperiment object from a data frame

Source: R/proteomics_computation.R
make_se.Rd

This function creates a SummarizedExperiment object from a data frame containing protein expression data.

Usage

make_se(proteins_unique, columns, expdesign, log2_transform = TRUE)

Arguments

proteins_unique

A data frame containing the protein expression data

columns

A vector of column numbers containing the numeric expression data

expdesign

A data frame containing the experimental design

log2_transform

A logical value. Whether to log2 transform the data. Default is TRUE.

Value

A SummarizedExperiment object