met.SanityCheckData is used for data processing, and performs a basic sanity
check of the uploaded content, ensuring that the data is suitable for further analysis.
The function will return a message if the data has successfully passed the check
and is deemed suitable for further analysis. If it fails, the function will return a 0.
The function will perform the check directly onto the mSet$dataSet object, and must
be performed immediately after reading in data.
The sanity check function evaluates the accuracy of sample and class labels, data structure,
deals with non-numeric values, and removes columns that are constant across all samples (variance = 0).
This function is performed automatically as part of met.read_data
Arguments
- mSetObj
Enter the name of the created mSetObj (see
met.initialize)
References
adapted from SanityCheckData (https://github.com/xia-lab/MetaboAnalystR).
Author
Nicolas T. Wirth mail.nicowirth@gmail.com Technical University of Denmark License: GNU GPL (>= 2)